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Home » Recipes » Sweet Bread

Chocolate Zucchini Muffins | Gluten Free

Published: Apr 10, 2023 · Updated: Aug 6, 2024 by Carissa Erzen · This post may contain affiliate links · 6 Comments

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5 from 4 votes

These easy gluten free chocolate zucchini muffins are filled with fresh shredded zucchini, making them super moist and fluffy. The rich chocolate flavor and salty sweet caramel filling make each bite of these healthy muffins absolutely decadent.

And for more muffin recipes, try my cinnamon streusel muffins or cruffins (croissant muffins!)

close up of melted caramel on the top of the gluten free chocolate zucchini muffin

Adding shredded zucchini to baked goods is a great way to increase your vegetable intake. Plus shredded zucchini adds the perfect amount of moisture to these muffins, making them soft and fluffy. Try chocolate chip zucchini bread for the loaf version of this recipe.

The end result of these gluten free chocolate zucchini muffins is perfection. Each bite ensures a mouthful of rich chocolate flavor, which pairs excellently with the sweet, buttery, gooey caramel filling. You can't even taste the zucchini, but it adds antioxidants and fiber!

Since the beginning of 2020, I’ve been in my kitchen developing foolproof recipes for beginner home bakers. I tested this recipe several times to get the perfect texture and flavor.

three chocolate muffins stacked on top of each other

Ingredients

  • Granulated sugar - adds sweetness to the muffins
  • Brown sugar - adds both sweetness and moisture
  • Eggs - binds the batter together and helps the muffins rise in the oven
  • Shredded zucchini - drain the shredded zucchini well to avoid the batter from becoming to watery
  • Vegetable oil - keeps the muffins moist, tender and fluffy
  • Vanilla - brings out the flavors of the other ingredients
  • Salt - brings out the flavors of the other ingredients
  • Gluten free flour blend - use a brand that includes xanthan gum, like Bob's Red Mill 1-to-1 Gluten Free Baking Flour
  • Baking soda and baking powder - act as leavening agents to help the muffins rise in the oven
  • Unsweetened cocoa powder - adds the essential rich, chocolate flavor
  • Soft caramel candy - the caramel filling is optional, since these muffins also taste amazing without it

How to Make Gluten Free Chocolate Zucchini Muffins

  1. Line a muffin tin with muffin cups. Preheat the oven to 350°F.
  2. In a large mixing bowl, whisk the granulated sugar, brown sugar and eggs together until it is smooth, after about a minute.
  3. Stir in the shredded and drained zucchini, vegetable oil, vanilla and salt. Set aside.
  4. In a separate mixing bowl, whisk together the flour, baking soda, baking powder, and cocoa powder.
  5. Add the dry ingredients into the wet ingredients and mix gently, just until there's no dry flour visible.
  6. Fill each muffin cup ¾ full with the batter. Tear apart small pieces of the soft caramel candy and flatten them. Place a caramel candy piece on top of the batter in each muffin cup.
  7. Bake for 18 to 20 minutes, until a toothpick inserted to the edge (where there is no caramel) comes out clean.
  8. Let cool for at least 10 minutes.
side view of a gluten free chocolate zucchini muffin in a green muffin cup

Recipe FAQ's

Do you peel zucchini for zucchini muffins?

There's no need to peel zucchini before you shred it. You can use a cheese grater or a food processor to shred your zucchini.

Should seeds be removed from zucchini for muffins?

Zucchini from the grocery store generally isn't big enough to get seeds so large that they need to be removed to make zucchini bread.
However, if you're getting zucchini from a garden or farm that's grown over a foot in length, try to pick out any seeds.

Do I need to squeeze the water from zucchini?

Yes, you want to squeeze as much liquid from the shredded zucchini as possible before adding it into the muffin batter. Otherwise your batter could be too runny.

close up of seven gluten free chocolate zucchini muffins

Storing

  • Room temperature: Store in an airtight container at room temperature for up to 3 days.
  • Fridge: Store in an airtight container in the fridge for up to 5 days.
  • Freezer: Store muffins wrapped individually in plastic cling wrap then stored in freezer-safe Ziplock bags in the freezer for up to 3 months.
  • Reheating: Reheat muffins from the counter or the fridge in the microwave for about 15 to 30 seconds, until warm.

Recipe Substitutions and Variations

  • Fold in one-third cup chocolate chips with the shredded zucchini to make a batch of decadent chocolate chip zucchini muffins.
  • Substitute the vegetable oil with melted coconut oil.

Pro Tip: After shredding your zucchini, wrap it in a clean kitchen towel and squeeze as much water out as possible. You can also leave the shredded zucchini in a fine mesh sieve over a bowl for about thirty minutes, to allow additional water to drain out.

twelve muffin cups filled with muffin batter and topped with caramel candy pieces

More Recipes with Zucchini

If you have more zucchini on your hands, use it in these delicious sweet and savory recipes!

Sweet Zucchini Recipes

  • Chocolate Zucchini Bread
  • Zucchini Banana Bread
  • Peanut Butter Smoothie Bowl

Savory Zucchini Recipes

  • Vegetarian Stuffed Zucchini Boats
  • Zucchini Fritter Tacos
  • Simple Shrimp and Zucchini Curry
  • Easy Vegan Chickpea Soup
  • Vegan Peanut Butter Curry
close up of the soft inside of a chocolate caramel zucchini muffin

Gluten Free Chocolate Zucchini Muffins

Carissa Erzen
The rich flavor of these gluten free chocolate zucchini muffins pairs deliciously with the buttery, sweet, gooey caramel center in each bite. And shredded zucchini keeps these muffins moist for breakfast, lunch, snacks and dessert!
5 from 4 votes
Print Pin Recipe Rate Recipe Save Saved Recipe!
Prep Time 20 minutes mins
Cook Time 20 minutes mins
Total Time 40 minutes mins
Course Breakfast, Dessert, Snack
Cuisine American
Servings 20 muffins
Calories 158 kcal

Ingredients
  

  • ½ cup granulated sugar
  • ¼ cup brown sugar packed into the measuring cup
  • 3 large eggs
  • 2 cups shredded zucchini (drained well; see tips above in blog post)
  • ½ cup vegetable oil
  • 1 teaspoon vanilla
  • ½ teaspoon salt
  • 2 cups gluten free baking flour blend use a brand that includes xanthan gum, like Bob's Red Mill 1-to-1 Gluten Free Baking Flour
  • ½ teaspoon baking soda
  • 1½ teaspoon baking powder
  • ½ cup cocoa powder
  • ⅓ cup soft caramel candy optional for the filling

Instructions
 

  • Line a muffin tin with muffin cups. Preheat the oven to 350°F.
  • In a large mixing bowl, whisk the granulated sugar, brown sugar and eggs together until it is smooth, after about a minute.
  • Stir in the shredded and drained zucchini, vegetable oil, vanilla and salt. Set aside.
  • In a separate mixing bowl, whisk together the flour, baking soda, baking powder, and cocoa powder.
  • Add the dry ingredients into the wet ingredients and mix just until there's no dry flour visible.
  • Fill each muffin cup ¾ full with the batter.
    Tear apart small pieces of the soft caramel candy and flatten them between your fingers.
    Place a caramel candy piece on top of the batter in each muffin cup.
  • Bake for 18 to 20 minutes, until a toothpick inserted to the edge (where there is no caramel) comes out clean.
    Let cool for at least 10 minutes, then enjoy!!

Notes

  • You don't need to peel or remove the seeds from the zucchini.
  • After shredding your zucchini, wrap it in a clean kitchen towel and squeeze as much water out as possible. You can also leave the shredded zucchini in a fine mesh sieve over a bowl for about thirty minutes, to allow additional water to drain out.
  • Store in an airtight container at room temperature for up to 3 days, in the fridge for up to 5 days, or in the freezer for up to 3 months.
  • Leave out the optional caramel candy filling to make this recipe dairy free.

Nutrition

Serving: 1muffinCalories: 158kcalCarbohydrates: 22gProtein: 3gFat: 7gSaturated Fat: 1gPolyunsaturated Fat: 3gMonounsaturated Fat: 2gTrans Fat: 0.04gCholesterol: 25mgSodium: 140mgPotassium: 130mgFiber: 1gSugar: 11gVitamin A: 85IUVitamin C: 4mgCalcium: 39mgIron: 1mg
Keyword chocolate caramel zucchini muffin, chocolate zucchini muffin, gluten free chocolate zucchini muffin, zucchini muffin
Did you make this recipe?Leave a comment below and tag @humbly-homemade on social!

More Delicious Sweet Bread Recipes

  • Two stacked scones on a plate next to three blackberries.
    Glazed Lemon Blackberry Scones (with Frozen Blackberries)
  • Easy Pumpkin Streusel Muffins
  • Streusel Topped Banana Bread
  • Cinnamon Streusel Muffins

About Carissa Erzen

Growing up in Germany, I fell head-over-heels in love with ALL the German baked goods, from Lebkuchen to pretzels. Now I'm the founder, recipe developer, and food photographer behind Humbly Homemade, where I test and share German sweets lovingly created from scratch. So pull up a chair, and stay a while!

Reader Interactions

Comments

  1. Sherine

    August 12, 2024 at 2:28 pm

    5 stars
    I am a huge chocolate fan, so I added extra chocolate chips into the muffin batter. These were so rich and delicious! I brought them to share with my coworkers and they were gone in like 30 minutes! Wonderful!!

    Reply
  2. Monica

    August 12, 2024 at 2:27 pm

    5 stars
    These were soooo good! I didn't add the caramel, but even without it, these were delicious! The texture is so moist and the flavor is perfect! You'd never even guess there's zucchini in there 😉

    Reply
  3. Shanon

    August 06, 2024 at 2:27 pm

    5 stars
    These are so cute and tasty! I used our home grown zucchinis as well

    Reply
    • Carissa Erzen

      August 21, 2024 at 11:26 am

      Yay to using homemade zucchini! 🙂

      Reply
  4. Yum-number1

    August 27, 2021 at 9:48 am

    Woah!! This is my version of a “salad” 🤤

    Reply
    • strawberryandcream

      September 15, 2021 at 9:51 am

      Who said salad has to come in a bowl full of leaves, right?? :p

      Reply
5 from 4 votes (1 rating without comment)

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